Program Listing for File potentialBendingHelfrich.hpp

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#ifndef __potentialBendingHelfrich_HPP__
#define __potentialBendingHelfrich_HPP__

//host
#include "computeforceclass.hpp"

//
#include "../system/systemclass.hpp"
#include "../mesh/computegeometry.hpp"
class ComputeVertexBendingHelfrichEnergy : public ComputeForceClass
{
public:
  ComputeVertexBendingHelfrichEnergy(SystemClass &system) : ComputeForceClass(system)
  {
    m_name = "BendingGK";
    m_type = "vertex";
    this->set_default_properties();
  }

  ~ComputeVertexBendingHelfrichEnergy() {}

  void set_default_properties(void) override
  {
    pymemb::vector<real> _kappaH(NUM_TYPES_ALLOWED, 1.0);
    m_kappaH = _kappaH;
    pymemb::vector<real> _H0(NUM_TYPES_ALLOWED, 0.0);
    m_H0 = _H0;
    pymemb::vector<real> _kappaG(NUM_TYPES_ALLOWED, 0.0);
    m_kappaG = _kappaG;
  }

  using ComputeForceClass::set_property;
  void set_property(std::map<std::string, std::map<std::string, std::string>> &region_map) override
  {
    for (const auto &item : region_map)
    {
      if (item.first.compare("kappaH") == 0)
      {
        pymemb::vector<real> _kappaH= util::from_dict_to_vector_types(pymemb::copy(m_kappaH), item.second);
        m_kappaH = _kappaH;
      }
      else if (item.first.compare("H0") == 0)
      {
        pymemb::vector<real> _H0 = util::from_dict_to_vector_types(pymemb::copy(m_H0), item.second);
        m_H0 = _H0;
      }
      else if (item.first.compare("kappaG") == 0)
      {
        pymemb::vector<real> _kappaG = util::from_dict_to_vector_types(pymemb::copy(m_kappaG), item.second);
        m_kappaG = _kappaG;
      }
      else
        this->print_warning_property_name(item.first);
    }
  }

  std::map<std::string, std::string> get_info(void) override
  {
    std::map<std::string, std::string> value;
    value["name"] = m_name;
    value["type"] = m_type;
    value["kappaH"] = util::to_string_vec(m_kappaH);
    value["H0"] = util::to_string_vec(m_H0);
    value["kappaG"] = util::to_string_vec(m_kappaG);
    return value;
  }

  void compute_energy(void) override;
  void compute(void) override;
  real compute_edge_energy(int) override;
  real compute_vertex_energy(int) override;
  void compute_stress(void) override;
  void compute_atomic_stress(void) override;
private:
  pymemb::vector<double> m_kappaH;
  pymemb::vector<double> m_H0;
  pymemb::vector<double> m_kappaG;
};

#endif