C++ API

Class Hierarchy

• • Namespace pymemb
    • Template Struct reduce_tensor
    • Struct reset_edge_energy
    • Struct reset_face_energy
    • Template Struct reset_tensor
    • Struct reset_vertex_acceleration
    • Struct reset_vertex_energy
    • Struct reset_vertex_external_forces
    • Struct reset_vertex_forces
    • Struct reset_vertex_velocities
  • Struct BoxType
  • Struct forceMatrix
  • Template Struct HE_Edge
  • Template Struct HE_Face
  • Template Struct HE_HalfEdge
  • Template Struct HE_Vertex
  • Struct Property
  • Struct PropertyEdges
  • Struct PropertyFaces
  • Struct PropertyVertices
  • Template Struct SetProperty
  • Template Struct SetRegionEdges
  • Template Struct SetRegionFaces
  • Template Struct SetRegionVertices
  • Template Struct TensorType
  • Struct triangle
  • Struct triangle_type
  • Struct vertices_type
  • Template Struct xyType
  • Class ComputeForceClass
  • Class ComputeMesh
  • Class ComputeVertexBendingEnergy
  • Class ComputeVertexBendingHelfrichEnergy
  • Class ComputeVertexCauchyGreenEnergy
  • Class ComputeVertexConstantAreaTriangleEnergy
  • Class ComputeVertexDihedralEnergy
  • Class ComputeVertexFerromagneticEnergy
  • Class ComputeVertexHarmonicEnergy
  • Class ComputeVertexHarmonicSpinEnergy
  • Class ComputeVertexLimitEnergy
  • Class ComputeVertexLineTension
  • Class ComputeVertexSubstrateCylinderEnergy
  • Class ComputeVertexSubstrateEnergy
  • Class ComputeVertexSurfaceTension
  • Class ConstraintArea
  • Class ConstraintClass
  • Class ConstraintVolume
  • Class DumperClass
  • Class EvolverClass
  • Class IntegratorBrownianMeshVertex
  • Class IntegratorClass
  • Class IntegratorVelocityVerletMeshVertex
  • Class MeshOperations
  • Class MinimizerClass
  • Class MinimizerMeshFIRE
  • Class MonteCarloIntegrator
  • Class MonteCarloIntegratorFlipEdge
  • Class MonteCarloIntegratorSpinVertex
  • Class MonteCarloIntegratorSwapEdge
  • Class MonteCarloIntegratorSwapVertex
  • Class MonteCarloIntegratorVertex
  • Class ReadMesh
  • Class RNG
  • Class SystemClass

Full API

Namespaces

• Namespace pymemb
  • Classes
  • Functions
  • Typedefs

• Namespace util
  • Functions

Classes and Structs

• Struct BoxType
  • Struct Documentation
    • BoxType
      • L
      • Llo
      • Lhi
      • periodic

• Struct forceMatrix
  • Struct Documentation
    • forceMatrix
      • forceM11
      • forceM12
      • forceM13

• Template Struct HE_Edge
  • Struct Documentation
    • HE_Edge
      • i
      • j
      • id
      • boundary
      • face_k
      • face_l
      • v0
      • v1
      • v2
      • v3
      • l0
      • _hedge
      • type
      • energy
      • _property

• Template Struct HE_Face
  • Struct Documentation
    • HE_Face
      • id
      • outer
      • nsides
      • normal
      • area
      • g_reference
      • g_reference_inv
      • normal_reference
      • r12_reference
      • r13_reference
      • v1
      • v2
      • v3
      • boundary
      • _hedge
      • type
      • energy
      • _property

• Template Struct HE_HalfEdge
  • Struct Documentation
    • HE_HalfEdge
      • index
      • vert_from
      • vert_to
      • edge
      • face
      • pair
      • next
      • prev
      • boundary
      • _property

• Template Struct HE_Vertex
  • Struct Documentation
    • HE_Vertex
      • r
      • id
      • boundary
      • coordination
      • cellId
      • normal
      • _hedge
      • type
      • v
      • accel
      • forceC
      • forceD
      • forceE
      • energy
      • mass
      • ip
      • spin
      • _property

• Struct Property
  • Struct Documentation
    • Property

• Struct PropertyEdges
  • Struct Documentation
    • PropertyEdges
      • age
      • cot_alpha
      • cot_beta

• Struct PropertyFaces
  • Struct Documentation
    • PropertyFaces
      • age
      • g_reference0_growth
      • k11
      • k12
      • k22

• Struct PropertyVertices
  • Struct Documentation
    • PropertyVertices
      • v
      • age
      • delaminated
      • radius

• Template Struct reduce_tensor
  • Struct Documentation
    • pymemb::reduce_tensor
      • operator()()

• Struct reset_edge_energy
  • Struct Documentation
    • pymemb::reset_edge_energy
      • operator()()

• Struct reset_face_energy
  • Struct Documentation
    • pymemb::reset_face_energy
      • operator()()

• Template Struct reset_tensor
  • Struct Documentation
    • pymemb::reset_tensor
      • operator()()

• Struct reset_vertex_acceleration
  • Struct Documentation
    • pymemb::reset_vertex_acceleration
      • operator()()

• Struct reset_vertex_energy
  • Struct Documentation
    • pymemb::reset_vertex_energy
      • operator()()

• Struct reset_vertex_external_forces
  • Struct Documentation
    • pymemb::reset_vertex_external_forces
      • operator()()

• Struct reset_vertex_forces
  • Struct Documentation
    • pymemb::reset_vertex_forces
      • operator()()

• Struct reset_vertex_velocities
  • Struct Documentation
    • pymemb::reset_vertex_velocities
      • operator()()

• Template Struct SetProperty
  • Struct Documentation
    • SetProperty
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()

• Template Struct SetRegionEdges
  • Inheritance Relationships
    • Base Type
  • Struct Documentation
    • SetRegionEdges
      • SetRegionEdges()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()

• Template Struct SetRegionFaces
  • Inheritance Relationships
    • Base Type
  • Struct Documentation
    • SetRegionFaces
      • SetRegionFaces()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()

• Template Struct SetRegionVertices
  • Inheritance Relationships
    • Base Type
  • Struct Documentation
    • SetRegionVertices
      • SetRegionVertices()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()
      • set_property()

• Template Struct TensorType
  • Struct Documentation
    • TensorType
      • xx
      • xy
      • xz
      • yx
      • yy
      • yz
      • zx
      • zy
      • zz

• Struct triangle
  • Struct Documentation
    • triangle

• Struct triangle_type
  • Struct Documentation
    • triangle_type
      • operator<()
      • id
      • v1
      • v2
      • v3
      • orientation
      • g_reference
      • normal_reference
      • is_reference_normal
      • is_reference_g
      • type
      • energy
      • prop

• Struct vertices_type
  • Struct Documentation
    • vertices_type
      • operator<()
      • id
      • r
      • type
      • forceC
      • forceD
      • forceE
      • energy
      • mass
      • prop

• Template Struct xyType
  • Struct Documentation
    • xyType
      • x
      • y
      • z
      • w

• Class ComputeForceClass
  • Inheritance Relationships
    • Derived Types
  • Class Documentation
    • ComputeForceClass

• Class ComputeMesh
  • Class Documentation
    • ComputeMesh
      • compute_mesh_energy()
      • compute_vertex_forces()
      • compute_stresses()
      • get_stresses()
      • compute_pressure()
      • compute_kinetic_energy_tensor()
      • compute_kinetic_energy()
      • compute_temperature()
      • compute_stresses_virial()
      • compute_stresses_atom()
      • ComputeMesh()
      • compute_vertex_normals()
      • compute_face_normals()
      • compute_edge_lengths()
      • gaussiancurvature_vertex()
      • meancurvature_vertex()
      • gaussiancurvature()
      • meancurvature()
      • compute_mesh_curvature()
      • compute_face_metric()
      • compute_mesh_volume()
      • compute_face_area()
      • compute_mesh_area()
      • compute_area_typed()
      • compute_vertex_area()

• Class ComputeVertexBendingEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexBendingEnergy
      • set_property()
      • set_property()
      • set_property()

• Class ComputeVertexBendingHelfrichEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexBendingHelfrichEnergy
      • ComputeVertexBendingHelfrichEnergy()
      • ~ComputeVertexBendingHelfrichEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • compute_stress()
      • compute_atomic_stress()
      • set_property()
      • set_property()

• Class ComputeVertexCauchyGreenEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexCauchyGreenEnergy
      • ComputeVertexCauchyGreenEnergy()
      • ~ComputeVertexCauchyGreenEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • compute_stress()
      • compute_atomic_stress()
      • set_property()
      • set_property()

• Class ComputeVertexConstantAreaTriangleEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexConstantAreaTriangleEnergy
      • ComputeVertexConstantAreaTriangleEnergy()
      • ~ComputeVertexConstantAreaTriangleEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • compute_stress()
      • compute_atomic_stress()
      • set_property()
      • set_property()

• Class ComputeVertexDihedralEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexDihedralEnergy
      • ComputeVertexDihedralEnergy()
      • ~ComputeVertexDihedralEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • compute_stress()
      • compute_atomic_stress()
      • set_property()
      • set_property()

• Class ComputeVertexFerromagneticEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexFerromagneticEnergy
      • set_property()
      • set_property()
      • set_property()

• Class ComputeVertexHarmonicEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexHarmonicEnergy
      • ComputeVertexHarmonicEnergy()
      • ~ComputeVertexHarmonicEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • compute_stress()
      • compute_atomic_stress()
      • set_property()
      • set_property()

• Class ComputeVertexHarmonicSpinEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexHarmonicSpinEnergy
      • set_property()
      • set_property()
      • set_property()

• Class ComputeVertexLimitEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexLimitEnergy
      • ComputeVertexLimitEnergy()
      • ~ComputeVertexLimitEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • set_property()
      • set_property()

• Class ComputeVertexLineTension
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexLineTension
      • set_property()
      • set_property()
      • set_property()

• Class ComputeVertexSubstrateCylinderEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexSubstrateCylinderEnergy
      • ComputeVertexSubstrateCylinderEnergy()
      • ~ComputeVertexSubstrateCylinderEnergy()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute()
      • compute_edge_energy()
      • compute_vertex_energy()
      • set_property()
      • set_property()

• Class ComputeVertexSubstrateEnergy
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexSubstrateEnergy
      • set_property()
      • set_property()
      • set_property()

• Class ComputeVertexSurfaceTension
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ComputeVertexSurfaceTension
      • ComputeVertexSurfaceTension()
      • ~ComputeVertexSurfaceTension()
      • set_default_properties()
      • set_property()
      • get_info()
      • compute_energy()
      • compute_face_energy()
      • compute()
      • set_property()
      • set_property()

• Class ConstraintArea
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ConstraintArea
      • ConstraintArea()
      • ~ConstraintArea()
      • set_default_properties()
      • set_property()
      • enforce()
      • compute_ref_gradient()
      • compute_gradient()

• Class ConstraintClass
  • Inheritance Relationships
    • Derived Types
  • Class Documentation
    • ConstraintClass
      • ConstraintClass()
      • ~ConstraintClass()
      • enforce()
      • compute_normal()
      • compute_gradient()
      • compute_ref_gradient()
      • is_satisfied()
      • should_apply()
      • info()
      • get_LagrangeMultiplier()
      • reset_LagrangeMultiplier()
      • set_property_common()
      • set_default_properties()
      • set_property()
      • set_property()
      • set_property()
      • print_warning_calling_err()
      • print_warning_calling()
      • print_warning_property_name()
      • _system
      • name
      • m_tol
      • m_target
      • m_value
      • m_lambda
      • m_type

• Class ConstraintVolume
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • ConstraintVolume
      • ConstraintVolume()
      • ~ConstraintVolume()
      • set_default_properties()
      • set_property()
      • enforce()
      • compute_ref_gradient()
      • compute_gradient()

• Class DumperClass
  • Class Documentation
    • DumperClass
      • DumperClass()
      • mesh_vertices_faces()
      • mesh_edge_vtk()
      • mesh_vtk()
      • mesh_vtk_periodic()
      • mesh_ply()
      • mesh_inp()
      • mesh_ply_periodic()
      • mesh_json()
      • mesh_txt()
      • setvtkLegacyFormat()
      • user_vertex_data()
      • user_face_data()
      • user_edge_data()
      • user_vertex_data()
      • user_face_data()
      • user_edge_data()

• Class EvolverClass
  • Class Documentation
    • EvolverClass
      • EvolverClass()
      • ~EvolverClass()
      • add_force()
      • delete_force()
      • set_property()
      • get_force_info()
      • get_minimizer_info()
      • get_integrator_info()
      • reset_mesh_forces()
      • compute_mesh_forces()
      • reset_mesh_energy()
      • compute_mesh_energy()
      • add_integrator()
      • delete_integrator()
      • set_time_step()
      • set_global_temperature()
      • add_minimizer()
      • delete_minimizer()
      • minimize()
      • add_constraints()
      • enforce_mesh_constraints()
      • delete_constraints()
      • set_max_iter_mesh_contraint()
      • reset_mesh_stresses()
      • compute_mesh_stresses()
      • reset_mesh_atom_stresses()
      • compute_mesh_atom_stresses()
      • evolve_mesh_md()
      • evolve_mesh_mc()
      • evolve_mesh_prestep()
      • evolve_mesh_poststep()
      • evolve_mesh_prestep()
      • evolve_mesh_poststep()
      • max_iter_mesh_contraint
      • has_vertex_forces
      • has_face_forces
      • has_edge_forces
      • _system
      • mesh_force_list
      • mesh_integrator_list
      • mesh_integrator_montecarlo_list
      • mesh_constraints_list
      • mesh_minimizer_list

• Class IntegratorBrownianMeshVertex
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • IntegratorBrownianMeshVertex
      • IntegratorBrownianMeshVertex()
      • ~IntegratorBrownianMeshVertex()
      • set_default_properties()
      • update_temperature_parameters()
      • update_time_step_parameters()
      • set_property()
      • get_info()
      • prestep()
      • poststep()
      • set_property()
      • set_property()

• Class IntegratorClass
  • Inheritance Relationships
    • Derived Types
  • Class Documentation
    • IntegratorClass
      • IntegratorClass()
      • ~IntegratorClass()
      • prestep()
      • poststep()
      • set_temperature()
      • update_temperature_parameters()
      • get_temperature()
      • set_time_step()
      • update_time_step_parameters()
      • get_time_step()
      • get_name()
      • get_type()
      • get_info()
      • set_default_properties()
      • set_property()
      • set_property()
      • set_property()
      • print_warning_calling()
      • print_warning_property_name()
      • _system
      • m_name
      • m_type
      • T
      • dt

• Class IntegratorVelocityVerletMeshVertex
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • IntegratorVelocityVerletMeshVertex
      • IntegratorVelocityVerletMeshVertex()
      • ~IntegratorVelocityVerletMeshVertex()
      • set_default_properties()
      • update_temperature_parameters()
      • update_time_step_parameters()
      • set_property()
      • get_info()
      • prestep()
      • poststep()
      • set_property()
      • set_property()

• Class MeshOperations
  • Class Documentation
    • MeshOperations
      • MeshOperations()
      • ~MeshOperations()
      • check_if_edge_can_flip()
      • edge_need_flip()
      • compute_average_edge_length()
      • edge_flip()
      • refine_mesh_edge_flip()
      • simplify_mesh()
      • refine_mesh_edge_split()
      • adapt_mesh()
      • compute_vertices_connexities()

• Class MinimizerClass
  • Inheritance Relationships
    • Derived Type
  • Class Documentation
    • MinimizerClass
      • MinimizerClass()
      • ~MinimizerClass()
      • minimize()
      • get_name()
      • get_type()
      • get_info()
      • set_default_properties()
      • set_property()
      • set_property()
      • set_property()
      • print_warning_calling()
      • print_warning_property_name()
      • _system
      • _evolver
      • m_name
      • m_type

• Class MinimizerMeshFIRE
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MinimizerMeshFIRE
      • MinimizerMeshFIRE()
      • ~MinimizerMeshFIRE()
      • set_default_properties()
      • update_time_step_parameters()
      • set_property()
      • is_satisfied()
      • get_info()
      • reset()
      • poststep1()
      • poststep2()
      • poststep3()
      • minimize()
      • set_property()
      • set_property()

• Class MonteCarloIntegrator
  • Inheritance Relationships
    • Derived Types
  • Class Documentation
    • MonteCarloIntegrator
      • MonteCarloIntegrator()
      • ~MonteCarloIntegrator()
      • integrate()
      • ComputeEnergyFromEdge()
      • ComputeEnergyFromVertex()
      • ComputeEnergyFromFace()
      • set_temperature()
      • update_temperature_parameters()
      • get_temperature()
      • get_name()
      • get_type()
      • get_info()
      • get_integrate_every()
      • set_integrate_every()
      • get_minimum_energy()
      • set_minimum_energy()
      • set_default_properties()
      • set_property()
      • set_property()
      • set_property()
      • print_warning_calling()
      • print_warning_property_name()
      • _system
      • _potentials
      • m_name
      • m_type
      • T
      • integrate_every
      • minimum_energy
      • NUM_TYPES_ALLOWED

• Class MonteCarloIntegratorFlipEdge
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MonteCarloIntegratorFlipEdge
      • MonteCarloIntegratorFlipEdge()
      • ~MonteCarloIntegratorFlipEdge()
      • set_default_properties()
      • set_property()
      • set_property()
      • get_info()
      • edge_flip()
      • integrate()
      • set_property()

• Class MonteCarloIntegratorSpinVertex
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MonteCarloIntegratorSpinVertex
      • MonteCarloIntegratorSpinVertex()
      • ~MonteCarloIntegratorSpinVertex()
      • set_default_properties()
      • set_property()
      • set_property()
      • get_info()
      • integrate()
      • set_property()

• Class MonteCarloIntegratorSwapEdge
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MonteCarloIntegratorSwapEdge
      • MonteCarloIntegratorSwapEdge()
      • ~MonteCarloIntegratorSwapEdge()
      • set_default_properties()
      • set_property()
      • set_property()
      • get_info()
      • integrate()
      • set_property()

• Class MonteCarloIntegratorSwapVertex
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MonteCarloIntegratorSwapVertex
      • MonteCarloIntegratorSwapVertex()
      • ~MonteCarloIntegratorSwapVertex()
      • set_default_properties()
      • set_property()
      • set_property()
      • get_info()
      • integrate()
      • set_property()

• Class MonteCarloIntegratorVertex
  • Inheritance Relationships
    • Base Type
  • Class Documentation
    • MonteCarloIntegratorVertex
      • MonteCarloIntegratorVertex()
      • ~MonteCarloIntegratorVertex()
      • set_default_properties()
      • set_property()
      • set_property()
      • get_info()
      • integrate()
      • set_property()

• Class ReadMesh
  • Class Documentation
    • ReadMesh
      • ReadMesh()
      • ReadMesh()
      • ReadMesh()
      • ReadMesh()
      • clear()
      • ~ReadMesh()
      • get_halfedges()
      • get_vertices()
      • get_edges()
      • get_faces()
      • getNumvertices()
      • getNumedges()
      • getNumfaces()
      • getNumhalfedges()
      • is_close_surface()

• Class RNG
  • Class Documentation
    • RNG
      • RNG()
      • ~RNG()
      • drnd()
      • gauss_rng()
      • lrnd()

• Class SystemClass
  • Class Documentation
    • SystemClass
      • SystemClass()
      • SystemClass()
      • ~SystemClass()
      • get_mesh_info()
      • get_box()
      • set_box()
      • set_box_length()
      • minImage()
      • need_wrapping()
      • enforce_periodic_boundary_conditions()
      • read_mesh_from_files()
      • read_mesh_from_json()
      • get_halfedges()
      • get_vertices()
      • get_edges()
      • get_faces()
      • set_halfedges()
      • set_vertices()
      • set_edges()
      • set_faces()
      • set()
      • get_edge_neighbours_host()
      • get_compute_mesh()
      • get_dumper()
      • init_stresses()
      • get_stress_vertices()
      • get_stress_edges()
      • get_stress_faces()
      • get_stress_virial()
      • get_stress_kinetic()
      • faces
      • vertices
      • halfedges
      • edges
      • stress_group_faces
      • stress_group_vertices
      • stress_group_edges
      • stress_virial_atom
      • stress_kinetic_atom
      • Numvertices
      • Numedges
      • Numfaces
      • Numhalfedges
      • close_surface
      • copy_in_host
      • compute_mesh
      • dumper

Functions

• Function compute_edge_cotangents_fn
  • Function Documentation

• Function compute_edge_length_fn
  • Function Documentation

• Function compute_face_normals_fn
  • Function Documentation

• Function compute_mean_curvature_operature
  • Function Documentation

• Function compute_vertex_energy_fn
  • Function Documentation

• Function ComputeEdgeFerroEnergy_lambda
  • Function Documentation

• Function ComputeEdgeHarmonicEnergy
  • Function Documentation

• Function ComputeEdgeHarmonicSpinEnergy
  • Function Documentation

• Function ComputeEdgeHarmonicSpinEnergy_ferro
  • Function Documentation

• Function ComputeEdgeLimitEnergy_lambda
  • Function Documentation

• Function ComputeVertexBendingEnergy_fn
  • Function Documentation

• Function ComputeVertexBendingEnergy_lambda
  • Function Documentation

• Function ComputeVertexBendingForce_fn(int, const HE_EdgeProp *, const HE_FaceProp *, HE_VertexProp *, const real *, const BoxType)
  • Function Documentation

• Function ComputeVertexBendingForce_fn(int, const HE_EdgeProp *, const HE_FaceProp *, HE_VertexProp *, const real *, const real *, const BoxType)
  • Function Documentation

• Function ComputeVertexBendingForce_lambda
  • Function Documentation

• Function ComputeVertexBendingHelfrichEnergyComputeForce_lambda
  • Function Documentation

• Function ComputeVertexBendingStress_fn(const int, HE_EdgeProp *, const HE_FaceProp *__restrict__, const HE_VertexProp *__restrict__, const real *__restrict__, realTensor *, const BoxType)
  • Function Documentation

• Function ComputeVertexBendingStress_fn(int, const HE_EdgeProp *, const HE_FaceProp *, HE_VertexProp *, const real *, const real *, realTensor *, const BoxType)
  • Function Documentation

• Function ComputeVertexBendingStressAtom_fn(const int, HE_EdgeProp *, const HE_FaceProp *__restrict__, const HE_VertexProp *__restrict__, const real *__restrict__, realTensor *, const BoxType)
  • Function Documentation

• Function ComputeVertexBendingStressAtom_fn(int, const HE_EdgeProp *, const HE_FaceProp *, HE_VertexProp *, const real *, const real *, realTensor *, const BoxType)
  • Function Documentation

• Function ComputeVertexCauchyGreenEnergy_fn
  • Function Documentation

• Function ComputeVertexCauchyGreenEnergy_lambda
  • Function Documentation

• Function ComputeVertexCauchyGreenForce_fn
  • Function Documentation

• Function ComputeVertexCauchyGreenForce_lambda
  • Function Documentation

• Function ComputeVertexCauchyGreenStress_fn
  • Function Documentation

• Function ComputeVertexCauchyGreenStressAtom_fn
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleEnergy_fn
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleEnergy_lambda
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleEnergyStress_fn
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleEnergyStressAtom_fn
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleForce_fn
  • Function Documentation

• Function ComputeVertexConstantAreaTriangleForce_lambda
  • Function Documentation

• Function ComputeVertexDihedralEnergy_fn
  • Function Documentation

• Function ComputeVertexDihedralEnergy_lambda
  • Function Documentation

• Function ComputeVertexFerroEnergy_fn
  • Function Documentation

• Function ComputeVertexHarmonicEnergy_fn
  • Function Documentation

• Function ComputeVertexHarmonicForce
  • Function Documentation

• Function ComputeVertexHarmonicForce_fn
  • Function Documentation

• Function ComputeVertexHarmonicSpinEnergy_kernel
  • Function Documentation

• Function ComputeVertexHarmonicSpinForce
  • Function Documentation

• Function ComputeVertexHarmonicSpinForce_kernel
  • Function Documentation

• Function ComputeVertexHarmonicStress_fn
  • Function Documentation

• Function ComputeVertexHarmonicStressAtom_fn
  • Function Documentation

• Function ComputeVertexLimitEnergy_fn
  • Function Documentation

• Function ComputeVertexLimitForce
  • Function Documentation

• Function ComputeVertexLimitForce_fn(int, HE_VertexProp *, HE_EdgeProp *, real *, real *, const BoxType&)
  • Function Documentation

• Function ComputeVertexLimitForce_fn(int, HE_VertexProp *, real *, real *)
  • Function Documentation

• Function ComputeVertexLimitForce_fn(int, HE_VertexProp *, real3, real3, real, int *)
  • Function Documentation

• Function ComputeVertexSurfaceTensionForce_fn
  • Function Documentation

• Function export_bool3
  • Function Documentation
    • export_bool3()

• Function export_BoxType
  • Function Documentation
    • export_BoxType()

• Function export_ComputeMesh
  • Function Documentation
    • export_ComputeMesh()

• Function export_DumperClass
  • Function Documentation
    • export_DumperClass()

• Function export_EvolverClass
  • Function Documentation
    • export_EvolverClass()

• Function export_HE_Edge
  • Function Documentation
    • export_HE_Edge()

• Function export_HE_Edge_Vector
  • Function Documentation
    • export_HE_Edge_Vector()

• Function export_HE_Face
  • Function Documentation
    • export_HE_Face()

• Function export_HE_Face_Vector
  • Function Documentation
    • export_HE_Face_Vector()

• Function export_HE_HalfEdge
  • Function Documentation
    • export_HE_HalfEdge()

• Function export_HE_HalfEdge_Vector
  • Function Documentation
    • export_HE_HalfEdge_Vector()

• Function export_HE_Vertex
  • Function Documentation
    • export_HE_Vertex()

• Function export_HE_Vertex_Vector
  • Function Documentation
    • export_HE_Vertex_Vector()

• Function export_inth3
  • Function Documentation
    • export_inth3()

• Function export_PropertyEdges
  • Function Documentation
    • export_PropertyEdges()

• Function export_PropertyEdges_Vector
  • Function Documentation
    • export_PropertyEdges_Vector()

• Function export_PropertyFaces
  • Function Documentation
    • export_PropertyFaces()

• Function export_PropertyFaces_Vector
  • Function Documentation
    • export_PropertyFaces_Vector()

• Function export_PropertyVertices
  • Function Documentation
    • export_PropertyVertices()

• Function export_PropertyVertices_Vector
  • Function Documentation
    • export_PropertyVertices_Vector()

• Function export_ReadMesh
  • Function Documentation
    • export_ReadMesh()

• Function export_real3
  • Function Documentation
    • export_real3()

• Function export_realTensor
  • Function Documentation
    • export_realTensor()

• Function export_SystemClass
  • Function Documentation
    • export_SystemClass()

• Function getCurrentDate
  • Function Documentation

• Function getOperatingSystem
  • Function Documentation

• Function is_triple_line_vertex
  • Function Documentation

• Function isOutsideCylinder
  • Function Documentation

• Function ProjectOnCylinderSurface
  • Function Documentation

• Function PYBIND11_MODULE
  • Function Documentation

• Function pymemb::arrange_vertices_by_smallest
  • Function Documentation
    • arrange_vertices_by_smallest()

• Function pymemb::CheckEdgeFlip_lambda
  • Function Documentation
    • CheckEdgeFlip_lambda()

• Function pymemb::cmassT
  • Function Documentation
    • cmassT()

• Function pymemb::compute_angle_vertex(const real3&, const real3&, const real3&, const BoxType&)
  • Function Documentation
    • compute_angle_vertex()

• Function pymemb::compute_angle_vertex(const real3&, const real3&, const real3&)
  • Function Documentation
    • compute_angle_vertex()

• Function pymemb::compute_area_triangle_from_metric
  • Function Documentation
    • compute_area_triangle_from_metric()

• Function pymemb::compute_area_triangle_from_vertex(const real3&, const real3&, const real3&, const BoxType&)
  • Function Documentation
    • compute_area_triangle_from_vertex()

• Function pymemb::compute_area_triangle_from_vertex(const real3&, const real3&, const real3&)
  • Function Documentation
    • compute_area_triangle_from_vertex()

• Function pymemb::compute_form_factor_triangle(real *, const real3&, const real3&, const real3&, const BoxType&)
  • Function Documentation
    • compute_form_factor_triangle()

• Function pymemb::compute_form_factor_triangle(real *, const real3&, const real3&, const real3&)
  • Function Documentation
    • compute_form_factor_triangle()

• Function pymemb::compute_matrix_F
  • Function Documentation
    • compute_matrix_F()

• Function pymemb::compute_normal_triangle(const real3&, const real3&, const real3&, const BoxType&)
  • Function Documentation
    • compute_normal_triangle()

• Function pymemb::compute_normal_triangle(const real3&, const real3&, const real3&)
  • Function Documentation
    • compute_normal_triangle()

• Function pymemb::compute_normal_triangle_unit(const real3&, const real3&, const real3&, const BoxType&)
  • Function Documentation
    • compute_normal_triangle_unit()

• Function pymemb::compute_normal_triangle_unit(const real3&, const real3&, const real3&)
  • Function Documentation
    • compute_normal_triangle_unit()

• Template Function pymemb::copy
  • Function Documentation
    • copy()

• Function pymemb::edge_need_flip
  • Function Documentation
    • edge_need_flip()

• Function pymemb::EdgeFlip_lambda
  • Function Documentation
    • EdgeFlip_lambda()

• Function pymemb::enforce_periodic(const real3&, const BoxType&)
  • Function Documentation
    • enforce_periodic()

• Function pymemb::enforce_periodic(real3&, inth3&, const BoxType&)
  • Function Documentation
    • enforce_periodic()

• Function pymemb::is_equiangular
  • Function Documentation
    • is_equiangular()

• Function pymemb::minimum_image
  • Function Documentation
    • minimum_image()

• Function pymemb::need_wrapping
  • Function Documentation
    • need_wrapping()

• Function pymemb::RefMatrixFromCartesian
  • Function Documentation

• Function pymemb::RefMatrixFromCylindrical
  • Function Documentation

• Function pymemb::unit_vector
  • Function Documentation
    • unit_vector()

• Function pymemb::vector_cross
  • Function Documentation
    • vector_cross()

• Function pymemb::vector_dot
  • Function Documentation
    • vector_dot()

• Function pymemb::vector_length
  • Function Documentation
    • vector_length()

• Function pymemb::vector_squared_length
  • Function Documentation
    • vector_squared_length()

• Function pymemb::vector_subtract(const real3&, const real3&)
  • Function Documentation
    • vector_subtract()

• Function pymemb::vector_subtract(const real3&, const real3&, const BoxType&)
  • Function Documentation
    • vector_subtract()

• Function pymemb::vector_sum
  • Function Documentation
    • vector_sum()

• Function scale_BendingForceMatrix_lambda
  • Function Documentation

• Function update_face
  • Function Documentation

• Function util::from_dict_to_vector_types(std::vector<int>, std::map<int, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types(std::vector<double>, std::map<int, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types(std::vector<bool>, std::map<int, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types(std::vector<int>, std::map<std::string, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types(std::vector<double>, std::map<std::string, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types(std::vector<bool>, std::map<std::string, std::string>)
  • Function Documentation
    • from_dict_to_vector_types()

• Function util::from_dict_to_vector_types_pair(std::vector<int>, uint, std::map<std::pair<std::string, std::string>, std::string>)
  • Function Documentation
    • from_dict_to_vector_types_pair()

• Function util::from_dict_to_vector_types_pair(std::vector<double>, uint, std::map<std::pair<std::string, std::string>, std::string>)
  • Function Documentation
    • from_dict_to_vector_types_pair()

• Function util::from_dict_to_vector_types_pair(std::vector<bool>, uint, std::map<std::pair<std::string, std::string>, std::string>)
  • Function Documentation
    • from_dict_to_vector_types_pair()

• Function util::from_string_bool
  • Function Documentation
    • from_string_bool()

• Function util::from_string_double
  • Function Documentation
    • from_string_double()

• Function util::from_string_int
  • Function Documentation
    • from_string_int()

• Function util::from_string_unsigned
  • Function Documentation
    • from_string_unsigned()

• Template Function util::saveToFile
  • Function Documentation
    • saveToFile()

• Template Function util::to_string
  • Function Documentation
    • to_string()

• Template Function util::to_string_scientific
  • Function Documentation
    • to_string_scientific()

• Template Function util::to_string_vec
  • Function Documentation
    • to_string_vec()

• Template Function util::to_string_with_precision
  • Function Documentation
    • to_string_with_precision()

• Template Function util::writeToFile(std::ofstream&, const T&)
  • Function Documentation
    • writeToFile()

• Template Function util::writeToFile(std::ofstream&, const T&, const Args&…)
  • Function Documentation
    • writeToFile()

Variables

• Variable BIG_VERTEX_ENERGY_LIMIT
  • Variable Documentation
    • BIG_VERTEX_ENERGY_LIMIT

Defines

• Define aXvec
  • Define Documentation
    • aXvec

• Define BIG_ENERGY_LIMIT
  • Define Documentation
    • BIG_ENERGY_LIMIT

• Define defPI
  • Define Documentation
    • defPI

• Define MAX
  • Define Documentation
    • MAX

• Define MIN
  • Define Documentation
    • MIN

• Define vcross
  • Define Documentation
    • vcross

• Define vdot
  • Define Documentation
    • vdot

• Define vset
  • Define Documentation
    • vset

• Define vsub
  • Define Documentation
    • vsub

• Define vsum
  • Define Documentation
    • vsum

• Define Xvec1
  • Define Documentation
    • Xvec1

• Define Xvec2
  • Define Documentation
    • Xvec2

• Define Xvec3
  • Define Documentation
    • Xvec3

• Define Xvec4
  • Define Documentation
    • Xvec4

Typedefs

• Typedef bool3
  • Typedef Documentation
    • bool3

• Typedef ComputeForceClass_ptr
  • Typedef Documentation
    • ComputeForceClass_ptr

• Typedef ConstraintClass_ptr
  • Typedef Documentation
    • ConstraintClass_ptr

• Typedef HE_EdgeProp
  • Typedef Documentation
    • HE_EdgeProp

• Typedef HE_FaceProp
  • Typedef Documentation
    • HE_FaceProp

• Typedef HE_HalfEdgeProp
  • Typedef Documentation
    • HE_HalfEdgeProp

• Typedef HE_VertexProp
  • Typedef Documentation
    • HE_VertexProp

• Typedef IntegratorClass_ptr
  • Typedef Documentation
    • IntegratorClass_ptr

• Typedef inth3
  • Typedef Documentation
    • inth3

• Typedef MinimizerClass_ptr
  • Typedef Documentation
    • MinimizerClass_ptr

• Typedef MonteCarloIntegrator_ptr
  • Typedef Documentation
    • MonteCarloIntegrator_ptr

• Typedef MonteCarloIntegratorFlipEdge_ptr
  • Typedef Documentation
    • MonteCarloIntegratorFlipEdge_ptr

• Typedef MonteCarloIntegratorSpinVertex_ptr
  • Typedef Documentation
    • MonteCarloIntegratorSpinVertex_ptr

• Typedef MonteCarloIntegratorSwapEdge_ptr
  • Typedef Documentation
    • MonteCarloIntegratorSwapEdge_ptr

• Typedef MonteCarloIntegratorSwapVertex_ptr
  • Typedef Documentation
    • MonteCarloIntegratorSwapVertex_ptr

• Typedef MonteCarloIntegratorVertex_ptr
  • Typedef Documentation
    • MonteCarloIntegratorVertex_ptr

• Typedef pymemb::vector
  • Typedef Documentation
    • vector

• Typedef real
  • Typedef Documentation
    • real

• Typedef real3
  • Typedef Documentation
    • real3

• Typedef realTensor
  • Typedef Documentation
    • realTensor

• Typedef RNG_ptr
  • Typedef Documentation
    • RNG_ptr

• Typedef VertexCompute
  • Typedef Documentation
    • VertexCompute