Index

A

aXvec (C macro)

B

BIG_ENERGY_LIMIT (C macro) BIG_VERTEX_ENERGY_LIMIT (C++ member) bool3 (C++ type) BoxType (C++ struct), [1]

BoxType::L (C++ member), [1] BoxType::Lhi (C++ member), [1] BoxType::Llo (C++ member), [1] BoxType::periodic (C++ member), [1]

C

ComputeForceClass (C++ class), [1] ComputeForceClass::_system (C++ member), [1] ComputeForceClass::compute (C++ function), [1] ComputeForceClass::compute_atomic_stress (C++ function), [1] ComputeForceClass::compute_edge_energy (C++ function), [1] ComputeForceClass::compute_energy (C++ function), [1] ComputeForceClass::compute_face_energy (C++ function), [1] ComputeForceClass::compute_stress (C++ function), [1] ComputeForceClass::compute_vertex_energy (C++ function), [1] ComputeForceClass::ComputeForceClass (C++ function), [1] ComputeForceClass::get_info (C++ function), [1] ComputeForceClass::get_name (C++ function), [1] ComputeForceClass::get_type (C++ function), [1] ComputeForceClass::m_name (C++ member), [1] ComputeForceClass::m_type (C++ member), [1] ComputeForceClass::NUM_TYPES_ALLOWED (C++ member), [1] ComputeForceClass::NUM_TYPES_PAIR (C++ member), [1] ComputeForceClass::print_warning_calling (C++ function), [1] ComputeForceClass::print_warning_property_name (C++ function), [1] ComputeForceClass::set_default_properties (C++ function), [1] ComputeForceClass::set_property (C++ function), [1], [2], [3], [4], [5] ComputeForceClass::~ComputeForceClass (C++ function), [1] ComputeForceClass_ptr (C++ type) ComputeMesh (C++ class), [1] ComputeMesh::compute_edge_lengths (C++ function), [1] ComputeMesh::compute_face_area (C++ function), [1] ComputeMesh::compute_face_metric (C++ function), [1] ComputeMesh::compute_face_normals (C++ function), [1] ComputeMesh::compute_kinetic_energy (C++ function), [1] ComputeMesh::compute_kinetic_energy_tensor (C++ function), [1] ComputeMesh::compute_mesh_area (C++ function), [1] ComputeMesh::compute_mesh_curvature (C++ function), [1] ComputeMesh::compute_mesh_energy (C++ function), [1] ComputeMesh::compute_mesh_volume (C++ function), [1] ComputeMesh::compute_pressure (C++ function), [1] ComputeMesh::compute_stresses (C++ function), [1] ComputeMesh::compute_stresses_atom (C++ function), [1] ComputeMesh::compute_stresses_virial (C++ function), [1] ComputeMesh::compute_temperature (C++ function), [1] ComputeMesh::compute_vertex_area (C++ function), [1] ComputeMesh::compute_vertex_forces (C++ function), [1] ComputeMesh::compute_vertex_normals (C++ function), [1] ComputeMesh::ComputeMesh (C++ function), [1] ComputeMesh::gaussiancurvature (C++ function), [1] ComputeMesh::gaussiancurvature_vertex (C++ function), [1] ComputeMesh::get_stresses (C++ function), [1] ComputeMesh::meancurvature (C++ function), [1] ComputeMesh::meancurvature_vertex (C++ function), [1] ComputeVertexBendingEnergy (C++ class), [1] ComputeVertexBendingEnergy::compute (C++ function), [1] ComputeVertexBendingEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexBendingEnergy::compute_edge_energy (C++ function), [1] ComputeVertexBendingEnergy::compute_energy (C++ function), [1] ComputeVertexBendingEnergy::compute_stress (C++ function), [1] ComputeVertexBendingEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexBendingEnergy::ComputeVertexBendingEnergy (C++ function), [1] ComputeVertexBendingEnergy::get_info (C++ function), [1] ComputeVertexBendingEnergy::set_default_properties (C++ function), [1] ComputeVertexBendingEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexBendingEnergy::~ComputeVertexBendingEnergy (C++ function), [1] ComputeVertexBendingHelfrichEnergy (C++ class), [1] ComputeVertexBendingHelfrichEnergy::compute (C++ function), [1] ComputeVertexBendingHelfrichEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexBendingHelfrichEnergy::compute_edge_energy (C++ function), [1] ComputeVertexBendingHelfrichEnergy::compute_energy (C++ function), [1] ComputeVertexBendingHelfrichEnergy::compute_stress (C++ function), [1] ComputeVertexBendingHelfrichEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexBendingHelfrichEnergy::ComputeVertexBendingHelfrichEnergy (C++ function), [1] ComputeVertexBendingHelfrichEnergy::get_info (C++ function), [1] ComputeVertexBendingHelfrichEnergy::set_default_properties (C++ function), [1] ComputeVertexBendingHelfrichEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexBendingHelfrichEnergy::~ComputeVertexBendingHelfrichEnergy (C++ function), [1] ComputeVertexCauchyGreenEnergy (C++ class), [1] ComputeVertexCauchyGreenEnergy::compute (C++ function), [1] ComputeVertexCauchyGreenEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexCauchyGreenEnergy::compute_edge_energy (C++ function), [1] ComputeVertexCauchyGreenEnergy::compute_energy (C++ function), [1] ComputeVertexCauchyGreenEnergy::compute_stress (C++ function), [1] ComputeVertexCauchyGreenEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexCauchyGreenEnergy::ComputeVertexCauchyGreenEnergy (C++ function), [1] ComputeVertexCauchyGreenEnergy::get_info (C++ function), [1] ComputeVertexCauchyGreenEnergy::set_default_properties (C++ function), [1] ComputeVertexCauchyGreenEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexCauchyGreenEnergy::~ComputeVertexCauchyGreenEnergy (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy (C++ class), [1] ComputeVertexConstantAreaTriangleEnergy::compute (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::compute_edge_energy (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::compute_energy (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::compute_stress (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::ComputeVertexConstantAreaTriangleEnergy (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::get_info (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::set_default_properties (C++ function), [1] ComputeVertexConstantAreaTriangleEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7]

ComputeVertexConstantAreaTriangleEnergy::~ComputeVertexConstantAreaTriangleEnergy (C++ function), [1] ComputeVertexDihedralEnergy (C++ class), [1] ComputeVertexDihedralEnergy::compute (C++ function), [1] ComputeVertexDihedralEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexDihedralEnergy::compute_edge_energy (C++ function), [1] ComputeVertexDihedralEnergy::compute_energy (C++ function), [1] ComputeVertexDihedralEnergy::compute_stress (C++ function), [1] ComputeVertexDihedralEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexDihedralEnergy::ComputeVertexDihedralEnergy (C++ function), [1] ComputeVertexDihedralEnergy::get_info (C++ function), [1] ComputeVertexDihedralEnergy::set_default_properties (C++ function), [1] ComputeVertexDihedralEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexDihedralEnergy::~ComputeVertexDihedralEnergy (C++ function), [1] ComputeVertexHarmonicEnergy (C++ class), [1] ComputeVertexHarmonicEnergy::compute (C++ function), [1] ComputeVertexHarmonicEnergy::compute_atomic_stress (C++ function), [1] ComputeVertexHarmonicEnergy::compute_edge_energy (C++ function), [1] ComputeVertexHarmonicEnergy::compute_energy (C++ function), [1] ComputeVertexHarmonicEnergy::compute_stress (C++ function), [1] ComputeVertexHarmonicEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexHarmonicEnergy::ComputeVertexHarmonicEnergy (C++ function), [1] ComputeVertexHarmonicEnergy::get_info (C++ function), [1] ComputeVertexHarmonicEnergy::set_default_properties (C++ function), [1] ComputeVertexHarmonicEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexHarmonicEnergy::~ComputeVertexHarmonicEnergy (C++ function), [1] ComputeVertexLimitEnergy (C++ class), [1] ComputeVertexLimitEnergy::compute (C++ function), [1] ComputeVertexLimitEnergy::compute_edge_energy (C++ function), [1] ComputeVertexLimitEnergy::compute_energy (C++ function), [1] ComputeVertexLimitEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexLimitEnergy::ComputeVertexLimitEnergy (C++ function), [1] ComputeVertexLimitEnergy::get_info (C++ function), [1] ComputeVertexLimitEnergy::set_default_properties (C++ function), [1] ComputeVertexLimitEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexLimitEnergy::~ComputeVertexLimitEnergy (C++ function), [1] ComputeVertexLineTension (C++ class), [1] ComputeVertexLineTension::compute_edge_energy (C++ function), [1] ComputeVertexLineTension::compute_energy (C++ function), [1] ComputeVertexLineTension::compute_vertex_energy (C++ function), [1] ComputeVertexLineTension::ComputeVertexLineTension (C++ function), [1] ComputeVertexLineTension::get_info (C++ function), [1] ComputeVertexLineTension::set_default_properties (C++ function), [1] ComputeVertexLineTension::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] ComputeVertexLineTension::~ComputeVertexLineTension (C++ function), [1] ComputeVertexSubstrateEnergy (C++ class), [1] ComputeVertexSubstrateEnergy::compute (C++ function), [1] ComputeVertexSubstrateEnergy::compute_edge_energy (C++ function), [1] ComputeVertexSubstrateEnergy::compute_energy (C++ function), [1] ComputeVertexSubstrateEnergy::compute_vertex_energy (C++ function), [1] ComputeVertexSubstrateEnergy::ComputeVertexSubstrateEnergy (C++ function), [1] ComputeVertexSubstrateEnergy::get_info (C++ function), [1] ComputeVertexSubstrateEnergy::set_default_properties (C++ function), [1] ComputeVertexSubstrateEnergy::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] ComputeVertexSubstrateEnergy::~ComputeVertexSubstrateEnergy (C++ function), [1] ConstraintArea (C++ class), [1] ConstraintArea::compute_gradient (C++ function), [1] ConstraintArea::compute_ref_gradient (C++ function), [1] ConstraintArea::ConstraintArea (C++ function), [1] ConstraintArea::enforce (C++ function), [1] ConstraintArea::set_default_properties (C++ function), [1] ConstraintArea::set_property (C++ function), [1] ConstraintArea::~ConstraintArea (C++ function), [1] ConstraintClass (C++ class), [1] ConstraintClass::_system (C++ member), [1] ConstraintClass::compute_gradient (C++ function), [1] ConstraintClass::compute_normal (C++ function), [1] ConstraintClass::compute_ref_gradient (C++ function), [1] ConstraintClass::ConstraintClass (C++ function), [1] ConstraintClass::enforce (C++ function), [1] ConstraintClass::get_LagrangeMultiplier (C++ function), [1] ConstraintClass::info (C++ function), [1] ConstraintClass::is_satisfied (C++ function), [1] ConstraintClass::m_lambda (C++ member), [1] ConstraintClass::m_target (C++ member), [1] ConstraintClass::m_tol (C++ member), [1] ConstraintClass::m_type (C++ member), [1] ConstraintClass::m_value (C++ member), [1] ConstraintClass::name (C++ member), [1] ConstraintClass::print_warning_calling (C++ function), [1] ConstraintClass::print_warning_calling_err (C++ function), [1] ConstraintClass::print_warning_property_name (C++ function), [1] ConstraintClass::reset_LagrangeMultiplier (C++ function), [1] ConstraintClass::set_default_properties (C++ function), [1] ConstraintClass::set_property (C++ function), [1], [2], [3], [4], [5] ConstraintClass::set_property_common (C++ function), [1] ConstraintClass::should_apply (C++ function), [1] ConstraintClass::~ConstraintClass (C++ function), [1] ConstraintClass_ptr (C++ type) ConstraintVolume (C++ class), [1] ConstraintVolume::compute_gradient (C++ function), [1] ConstraintVolume::compute_ref_gradient (C++ function), [1] ConstraintVolume::ConstraintVolume (C++ function), [1] ConstraintVolume::enforce (C++ function), [1] ConstraintVolume::set_default_properties (C++ function), [1] ConstraintVolume::set_property (C++ function), [1] ConstraintVolume::~ConstraintVolume (C++ function), [1]

D

defPI (C macro) DumperClass (C++ class), [1] DumperClass::DumperClass (C++ function), [1] DumperClass::mesh_edge_vtk (C++ function), [1] DumperClass::mesh_json (C++ function), [1] DumperClass::mesh_ply (C++ function), [1] DumperClass::mesh_ply_periodic (C++ function), [1]

DumperClass::mesh_txt (C++ function), [1] DumperClass::mesh_vertices_faces (C++ function), [1] DumperClass::mesh_vtk (C++ function), [1] DumperClass::mesh_vtk_periodic (C++ function), [1] DumperClass::setvtkLegacyFormat (C++ function), [1] DumperClass::user_edge_data (C++ function), [1], [2], [3] DumperClass::user_face_data (C++ function), [1], [2], [3] DumperClass::user_vertex_data (C++ function), [1], [2], [3]

E

EvolverClass (C++ class), [1] EvolverClass::_system (C++ member), [1] EvolverClass::add_constraints (C++ function), [1] EvolverClass::add_force (C++ function), [1] EvolverClass::add_integrator (C++ function), [1] EvolverClass::add_minimizer (C++ function), [1] EvolverClass::compute_mesh_atom_stresses (C++ function), [1] EvolverClass::compute_mesh_energy (C++ function), [1] EvolverClass::compute_mesh_forces (C++ function), [1] EvolverClass::compute_mesh_stresses (C++ function), [1] EvolverClass::delete_constraints (C++ function), [1] EvolverClass::delete_force (C++ function), [1] EvolverClass::delete_integrator (C++ function), [1] EvolverClass::delete_minimizer (C++ function), [1] EvolverClass::enforce_mesh_constraints (C++ function), [1] EvolverClass::evolve_mesh_mc (C++ function), [1] EvolverClass::evolve_mesh_md (C++ function), [1] EvolverClass::evolve_mesh_poststep (C++ function), [1], [2], [3] EvolverClass::evolve_mesh_prestep (C++ function), [1], [2], [3] EvolverClass::EvolverClass (C++ function), [1] EvolverClass::get_force_info (C++ function), [1] EvolverClass::get_integrator_info (C++ function), [1] EvolverClass::get_minimizer_info (C++ function), [1] EvolverClass::has_edge_forces (C++ member), [1] EvolverClass::has_face_forces (C++ member), [1] EvolverClass::has_vertex_forces (C++ member), [1] EvolverClass::max_iter_mesh_contraint (C++ member), [1] EvolverClass::mesh_constraints_list (C++ member), [1] EvolverClass::mesh_force_list (C++ member), [1] EvolverClass::mesh_integrator_list (C++ member), [1] EvolverClass::mesh_integrator_montecarlo_list (C++ member), [1] EvolverClass::mesh_minimizer_list (C++ member), [1] EvolverClass::minimize (C++ function), [1]

EvolverClass::reset_mesh_atom_stresses (C++ function), [1] EvolverClass::reset_mesh_energy (C++ function), [1] EvolverClass::reset_mesh_forces (C++ function), [1] EvolverClass::reset_mesh_stresses (C++ function), [1] EvolverClass::set_global_temperature (C++ function), [1] EvolverClass::set_max_iter_mesh_contraint (C++ function), [1] EvolverClass::set_property (C++ function), [1] EvolverClass::set_time_step (C++ function), [1] EvolverClass::~EvolverClass (C++ function), [1] export_bool3 (C++ function) export_BoxType (C++ function) export_ComputeMesh (C++ function) export_DumperClass (C++ function) export_EvolverClass (C++ function) export_HE_Edge (C++ function) export_HE_Edge_Vector (C++ function) export_HE_Face (C++ function) export_HE_Face_Vector (C++ function) export_HE_HalfEdge (C++ function) export_HE_HalfEdge_Vector (C++ function) export_HE_Vertex (C++ function) export_HE_Vertex_Vector (C++ function) export_inth3 (C++ function) export_PropertyEdges (C++ function) export_PropertyEdges_Vector (C++ function) export_PropertyFaces (C++ function) export_PropertyFaces_Vector (C++ function) export_PropertyVertices (C++ function) export_PropertyVertices_Vector (C++ function) export_ReadMesh (C++ function) export_real3 (C++ function) export_realTensor (C++ function) export_SystemClass (C++ function)

F

forceMatrix (C++ struct), [1] forceMatrix::forceM11 (C++ member), [1]

forceMatrix::forceM12 (C++ member), [1] forceMatrix::forceM13 (C++ member), [1]

H

HE_Edge (C++ struct), [1] HE_Edge::_hedge (C++ member), [1] HE_Edge::_property (C++ member), [1] HE_Edge::boundary (C++ member), [1] HE_Edge::energy (C++ member), [1] HE_Edge::face_k (C++ member), [1] HE_Edge::face_l (C++ member), [1] HE_Edge::i (C++ member), [1] HE_Edge::id (C++ member), [1] HE_Edge::j (C++ member), [1] HE_Edge::l0 (C++ member), [1] HE_Edge::type (C++ member), [1] HE_Edge::v0 (C++ member), [1] HE_Edge::v1 (C++ member), [1] HE_Edge::v2 (C++ member), [1] HE_Edge::v3 (C++ member), [1] HE_EdgeProp (C++ type) HE_Face (C++ struct), [1] HE_Face::_hedge (C++ member), [1] HE_Face::_property (C++ member), [1] HE_Face::area (C++ member), [1] HE_Face::boundary (C++ member), [1] HE_Face::energy (C++ member), [1] HE_Face::g_reference (C++ member), [1] HE_Face::g_reference_inv (C++ member), [1] HE_Face::id (C++ member), [1] HE_Face::normal (C++ member), [1] HE_Face::normal_reference (C++ member), [1] HE_Face::nsides (C++ member), [1] HE_Face::outer (C++ member), [1] HE_Face::r12_reference (C++ member), [1] HE_Face::r13_reference (C++ member), [1] HE_Face::type (C++ member), [1] HE_Face::v1 (C++ member), [1]

HE_Face::v2 (C++ member), [1] HE_Face::v3 (C++ member), [1] HE_FaceProp (C++ type) HE_HalfEdge (C++ struct), [1] HE_HalfEdge::_property (C++ member), [1] HE_HalfEdge::boundary (C++ member), [1] HE_HalfEdge::edge (C++ member), [1] HE_HalfEdge::face (C++ member), [1] HE_HalfEdge::index (C++ member), [1] HE_HalfEdge::next (C++ member), [1] HE_HalfEdge::pair (C++ member), [1] HE_HalfEdge::prev (C++ member), [1] HE_HalfEdge::vert_from (C++ member), [1] HE_HalfEdge::vert_to (C++ member), [1] HE_HalfEdgeProp (C++ type) HE_Vertex (C++ struct), [1] HE_Vertex::_hedge (C++ member), [1] HE_Vertex::_property (C++ member), [1] HE_Vertex::accel (C++ member), [1] HE_Vertex::boundary (C++ member), [1] HE_Vertex::cellId (C++ member), [1] HE_Vertex::coordination (C++ member), [1] HE_Vertex::energy (C++ member), [1] HE_Vertex::forceC (C++ member), [1] HE_Vertex::forceD (C++ member), [1] HE_Vertex::forceE (C++ member), [1] HE_Vertex::id (C++ member), [1] HE_Vertex::ip (C++ member), [1] HE_Vertex::mass (C++ member), [1] HE_Vertex::normal (C++ member), [1] HE_Vertex::r (C++ member), [1] HE_Vertex::type (C++ member), [1] HE_Vertex::v (C++ member), [1] HE_VertexProp (C++ type)

I

IntegratorBrownianMeshVertex (C++ class), [1] IntegratorBrownianMeshVertex::IntegratorBrownianMeshVertex (C++ function), [1] IntegratorBrownianMeshVertex::poststep (C++ function), [1] IntegratorBrownianMeshVertex::prestep (C++ function), [1] IntegratorBrownianMeshVertex::set_default_properties (C++ function), [1] IntegratorBrownianMeshVertex::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] IntegratorBrownianMeshVertex::update_temperature_parameters (C++ function), [1] IntegratorBrownianMeshVertex::update_time_step_parameters (C++ function), [1] IntegratorBrownianMeshVertex::~IntegratorBrownianMeshVertex (C++ function), [1] IntegratorClass (C++ class), [1] IntegratorClass::_system (C++ member), [1] IntegratorClass::dt (C++ member), [1] IntegratorClass::get_name (C++ function), [1] IntegratorClass::get_temperature (C++ function), [1] IntegratorClass::get_time_step (C++ function), [1] IntegratorClass::get_type (C++ function), [1] IntegratorClass::IntegratorClass (C++ function), [1] IntegratorClass::name (C++ member), [1] IntegratorClass::poststep (C++ function), [1] IntegratorClass::prestep (C++ function), [1] IntegratorClass::print_warning_calling (C++ function), [1]

IntegratorClass::print_warning_property_name (C++ function), [1] IntegratorClass::set_default_properties (C++ function), [1] IntegratorClass::set_property (C++ function), [1], [2], [3], [4], [5] IntegratorClass::set_temperature (C++ function), [1] IntegratorClass::set_time_step (C++ function), [1] IntegratorClass::T (C++ member), [1] IntegratorClass::type (C++ member), [1] IntegratorClass::update_temperature_parameters (C++ function), [1] IntegratorClass::update_time_step_parameters (C++ function), [1] IntegratorClass::~IntegratorClass (C++ function), [1] IntegratorClass_ptr (C++ type) IntegratorVelocityVerletMeshVertex (C++ class), [1] IntegratorVelocityVerletMeshVertex::IntegratorVelocityVerletMeshVertex (C++ function), [1] IntegratorVelocityVerletMeshVertex::poststep (C++ function), [1] IntegratorVelocityVerletMeshVertex::prestep (C++ function), [1] IntegratorVelocityVerletMeshVertex::set_default_properties (C++ function), [1] IntegratorVelocityVerletMeshVertex::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] IntegratorVelocityVerletMeshVertex::update_temperature_parameters (C++ function), [1] IntegratorVelocityVerletMeshVertex::update_time_step_parameters (C++ function), [1] IntegratorVelocityVerletMeshVertex::~IntegratorVelocityVerletMeshVertex (C++ function), [1] inth3 (C++ type)

M

MAX (C macro) MeshOperations (C++ class), [1] MeshOperations::check_if_edge_can_flip (C++ function), [1] MeshOperations::edge_flip (C++ function), [1] MeshOperations::equiangulation (C++ function), [1] MeshOperations::MeshOperations (C++ function), [1] MeshOperations::~MeshOperations (C++ function), [1] MIN (C macro) MinimizerClass (C++ class), [1] MinimizerClass::_evolver (C++ member), [1] MinimizerClass::_system (C++ member), [1] MinimizerClass::get_info (C++ function), [1] MinimizerClass::get_name (C++ function), [1] MinimizerClass::get_type (C++ function), [1] MinimizerClass::m_name (C++ member), [1] MinimizerClass::m_type (C++ member), [1] MinimizerClass::minimize (C++ function), [1] MinimizerClass::MinimizerClass (C++ function), [1] MinimizerClass::print_warning_calling (C++ function), [1] MinimizerClass::print_warning_property_name (C++ function), [1] MinimizerClass::set_default_properties (C++ function), [1] MinimizerClass::set_property (C++ function), [1], [2], [3], [4], [5] MinimizerClass::~MinimizerClass (C++ function), [1] MinimizerClass_ptr (C++ type) MinimizerMeshFIRE (C++ class), [1] MinimizerMeshFIRE::get_info (C++ function), [1] MinimizerMeshFIRE::is_satisfied (C++ function), [1] MinimizerMeshFIRE::minimize (C++ function), [1] MinimizerMeshFIRE::MinimizerMeshFIRE (C++ function), [1] MinimizerMeshFIRE::poststep1 (C++ function), [1] MinimizerMeshFIRE::poststep2 (C++ function), [1] MinimizerMeshFIRE::poststep3 (C++ function), [1] MinimizerMeshFIRE::reset (C++ function), [1] MinimizerMeshFIRE::set_default_properties (C++ function), [1] MinimizerMeshFIRE::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7] MinimizerMeshFIRE::update_time_step_parameters (C++ function), [1] MinimizerMeshFIRE::~MinimizerMeshFIRE (C++ function), [1] MonteCarloIntegrator (C++ class), [1] MonteCarloIntegrator::_potentials (C++ member), [1] MonteCarloIntegrator::_system (C++ member), [1] MonteCarloIntegrator::ComputeEnergyFromEdge (C++ function), [1] MonteCarloIntegrator::ComputeEnergyFromFace (C++ function), [1] MonteCarloIntegrator::ComputeEnergyFromVertex (C++ function), [1] MonteCarloIntegrator::get_integrate_every (C++ function), [1] MonteCarloIntegrator::get_minimum_energy (C++ function), [1] MonteCarloIntegrator::get_name (C++ function), [1] MonteCarloIntegrator::get_temperature (C++ function), [1]

MonteCarloIntegrator::get_type (C++ function), [1] MonteCarloIntegrator::integrate (C++ function), [1] MonteCarloIntegrator::integrate_every (C++ member), [1] MonteCarloIntegrator::minimum_energy (C++ member), [1] MonteCarloIntegrator::MonteCarloIntegrator (C++ function), [1] MonteCarloIntegrator::name (C++ member), [1] MonteCarloIntegrator::NUM_TYPES_ALLOWED (C++ member), [1] MonteCarloIntegrator::print_warning_calling (C++ function), [1] MonteCarloIntegrator::print_warning_property_name (C++ function), [1] MonteCarloIntegrator::set_default_properties (C++ function), [1] MonteCarloIntegrator::set_integrate_every (C++ function), [1] MonteCarloIntegrator::set_minimum_energy (C++ function), [1] MonteCarloIntegrator::set_property (C++ function), [1], [2], [3], [4], [5] MonteCarloIntegrator::set_temperature (C++ function), [1] MonteCarloIntegrator::T (C++ member), [1] MonteCarloIntegrator::type (C++ member), [1] MonteCarloIntegrator::update_temperature_parameters (C++ function), [1] MonteCarloIntegrator::~MonteCarloIntegrator (C++ function), [1] MonteCarloIntegrator_ptr (C++ type) MonteCarloIntegratorFlipEdge (C++ class), [1] MonteCarloIntegratorFlipEdge::edge_flip (C++ function), [1] MonteCarloIntegratorFlipEdge::integrate (C++ function), [1] MonteCarloIntegratorFlipEdge::MonteCarloIntegratorFlipEdge (C++ function), [1] MonteCarloIntegratorFlipEdge::set_default_properties (C++ function), [1] MonteCarloIntegratorFlipEdge::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] MonteCarloIntegratorFlipEdge::~MonteCarloIntegratorFlipEdge (C++ function), [1] MonteCarloIntegratorFlipEdge_ptr (C++ type) MonteCarloIntegratorSwapEdge (C++ class), [1] MonteCarloIntegratorSwapEdge::integrate (C++ function), [1] MonteCarloIntegratorSwapEdge::MonteCarloIntegratorSwapEdge (C++ function), [1] MonteCarloIntegratorSwapEdge::set_default_properties (C++ function), [1] MonteCarloIntegratorSwapEdge::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] MonteCarloIntegratorSwapEdge::~MonteCarloIntegratorSwapEdge (C++ function), [1] MonteCarloIntegratorSwapEdge_ptr (C++ type) MonteCarloIntegratorSwapVertex (C++ class), [1] MonteCarloIntegratorSwapVertex::integrate (C++ function), [1] MonteCarloIntegratorSwapVertex::MonteCarloIntegratorSwapVertex (C++ function), [1] MonteCarloIntegratorSwapVertex::set_default_properties (C++ function), [1] MonteCarloIntegratorSwapVertex::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] MonteCarloIntegratorSwapVertex::~MonteCarloIntegratorSwapVertex (C++ function), [1] MonteCarloIntegratorSwapVertex_ptr (C++ type) MonteCarloIntegratorVertex (C++ class), [1] MonteCarloIntegratorVertex::integrate (C++ function), [1] MonteCarloIntegratorVertex::MonteCarloIntegratorVertex (C++ function), [1] MonteCarloIntegratorVertex::set_default_properties (C++ function), [1] MonteCarloIntegratorVertex::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] MonteCarloIntegratorVertex::~MonteCarloIntegratorVertex (C++ function), [1] MonteCarloIntegratorVertex_ptr (C++ type)

P

Property (C++ struct), [1] PropertyEdges (C++ struct), [1] PropertyEdges::age (C++ member), [1] PropertyEdges::cot_alpha (C++ member), [1] PropertyEdges::cot_beta (C++ member), [1] PropertyFaces (C++ struct), [1] PropertyFaces::age (C++ member), [1] PropertyFaces::g_reference0_growth (C++ member), [1] PropertyFaces::k11 (C++ member), [1] PropertyFaces::k12 (C++ member), [1] PropertyFaces::k22 (C++ member), [1] PropertyVertices (C++ struct), [1] PropertyVertices::age (C++ member), [1] PropertyVertices::delaminated (C++ member), [1] PropertyVertices::radius (C++ member), [1] PropertyVertices::v (C++ member), [1] pymemb::arrange_vertices_by_smallest (C++ function) pymemb::CheckEdgeFlip_lambda (C++ function) pymemb::cmassT (C++ function) pymemb::compute_angle_vertex (C++ function), [1] pymemb::compute_area_triangle_from_metric (C++ function) pymemb::compute_area_triangle_from_vertex (C++ function), [1] pymemb::compute_form_factor_triangle (C++ function), [1] pymemb::compute_matrix_F (C++ function) pymemb::compute_normal_triangle (C++ function), [1] pymemb::compute_normal_triangle_unit (C++ function), [1] pymemb::copy (C++ function), [1]

pymemb::EdgeFlip_lambda (C++ function) pymemb::enforce_periodic (C++ function), [1] pymemb::is_equiangular (C++ function) pymemb::minimum_image (C++ function) pymemb::need_wrapping (C++ function) pymemb::reduce_tensor (C++ struct) pymemb::reduce_tensor::operator() (C++ function) pymemb::reset_edge_energy (C++ struct) pymemb::reset_edge_energy::operator() (C++ function) pymemb::reset_face_energy (C++ struct) pymemb::reset_face_energy::operator() (C++ function) pymemb::reset_tensor (C++ struct) pymemb::reset_tensor::operator() (C++ function) pymemb::reset_vertex_acceleration (C++ struct) pymemb::reset_vertex_acceleration::operator() (C++ function) pymemb::reset_vertex_energy (C++ struct) pymemb::reset_vertex_energy::operator() (C++ function) pymemb::reset_vertex_external_forces (C++ struct) pymemb::reset_vertex_external_forces::operator() (C++ function) pymemb::reset_vertex_forces (C++ struct) pymemb::reset_vertex_forces::operator() (C++ function) pymemb::reset_vertex_velocities (C++ struct) pymemb::reset_vertex_velocities::operator() (C++ function) pymemb::unit_vector (C++ function) pymemb::vector (C++ type) pymemb::vector_cross (C++ function) pymemb::vector_subtract (C++ function), [1] pymemb::vector_sum (C++ function)

R

ReadMesh (C++ class), [1] ReadMesh::clear (C++ function), [1] ReadMesh::get_edges (C++ function), [1] ReadMesh::get_faces (C++ function), [1] ReadMesh::get_halfedges (C++ function), [1] ReadMesh::get_vertices (C++ function), [1] ReadMesh::getNumedges (C++ function), [1] ReadMesh::getNumfaces (C++ function), [1] ReadMesh::getNumhalfedges (C++ function), [1] ReadMesh::getNumvertices (C++ function), [1] ReadMesh::is_close_surface (C++ function), [1]

ReadMesh::ReadMesh (C++ function), [1], [2], [3], [4], [5], [6], [7] ReadMesh::~ReadMesh (C++ function), [1] real (C++ type) real3 (C++ type) realTensor (C++ type) RNG (C++ class), [1] RNG::drnd (C++ function), [1] RNG::gauss_rng (C++ function), [1] RNG::lrnd (C++ function), [1] RNG::RNG (C++ function), [1] RNG::~RNG (C++ function), [1] RNG_ptr (C++ type)

S

SetProperty (C++ struct), [1] SetProperty::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] SetRegionEdges (C++ struct), [1] SetRegionEdges::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] SetRegionEdges::SetRegionEdges (C++ function), [1] SetRegionFaces (C++ struct), [1] SetRegionFaces::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] SetRegionFaces::SetRegionFaces (C++ function), [1] SetRegionVertices (C++ struct), [1] SetRegionVertices::set_property (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] SetRegionVertices::SetRegionVertices (C++ function), [1] SystemClass (C++ class), [1] SystemClass::close_surface (C++ member), [1] SystemClass::compute_mesh (C++ member), [1] SystemClass::copy_in_host (C++ member), [1] SystemClass::dumper (C++ member), [1] SystemClass::edges (C++ member), [1] SystemClass::enforce_periodic_boundary_conditions (C++ function), [1] SystemClass::faces (C++ member), [1] SystemClass::get_box (C++ function), [1] SystemClass::get_compute_mesh (C++ function), [1] SystemClass::get_dumper (C++ function), [1] SystemClass::get_edge_neighbours_host (C++ function), [1] SystemClass::get_edges (C++ function), [1] SystemClass::get_faces (C++ function), [1] SystemClass::get_halfedges (C++ function), [1] SystemClass::get_mesh_info (C++ function), [1] SystemClass::get_stress_edges (C++ function), [1] SystemClass::get_stress_faces (C++ function), [1]

SystemClass::get_stress_kinetic (C++ function), [1] SystemClass::get_stress_vertices (C++ function), [1] SystemClass::get_stress_virial (C++ function), [1] SystemClass::get_vertices (C++ function), [1] SystemClass::halfedges (C++ member), [1] SystemClass::init_stresses (C++ function), [1] SystemClass::minImage (C++ function), [1] SystemClass::need_wrapping (C++ function), [1] SystemClass::Numedges (C++ member), [1] SystemClass::Numfaces (C++ member), [1] SystemClass::Numhalfedges (C++ member), [1] SystemClass::Numvertices (C++ member), [1] SystemClass::read_mesh_from_files (C++ function), [1] SystemClass::read_mesh_from_json (C++ function), [1] SystemClass::set (C++ function), [1] SystemClass::set_box (C++ function), [1] SystemClass::set_box_length (C++ function), [1] SystemClass::set_edges (C++ function), [1] SystemClass::set_faces (C++ function), [1] SystemClass::set_halfedges (C++ function), [1] SystemClass::set_vertices (C++ function), [1] SystemClass::stress_group_edges (C++ member), [1] SystemClass::stress_group_faces (C++ member), [1] SystemClass::stress_group_vertices (C++ member), [1] SystemClass::stress_kinetic_atom (C++ member), [1] SystemClass::stress_virial_atom (C++ member), [1] SystemClass::SystemClass (C++ function), [1], [2], [3] SystemClass::vertices (C++ member), [1] SystemClass::~SystemClass (C++ function), [1]

T

TensorType (C++ struct), [1] TensorType::xx (C++ member), [1] TensorType::xy (C++ member), [1] TensorType::xz (C++ member), [1] TensorType::yx (C++ member), [1] TensorType::yy (C++ member), [1] TensorType::yz (C++ member), [1] TensorType::zx (C++ member), [1] TensorType::zy (C++ member), [1] TensorType::zz (C++ member), [1] triangle (C++ struct) triangle_type (C++ struct)

triangle_type::energy (C++ member) triangle_type::g_reference (C++ member) triangle_type::id (C++ member) triangle_type::is_reference_g (C++ member) triangle_type::is_reference_normal (C++ member) triangle_type::normal_reference (C++ member) triangle_type::operator< (C++ function) triangle_type::orientation (C++ member) triangle_type::prop (C++ member) triangle_type::type (C++ member) triangle_type::v1 (C++ member) triangle_type::v2 (C++ member) triangle_type::v3 (C++ member)

U

util::from_dict_to_vector_types (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11] util::from_dict_to_vector_types_pair (C++ function), [1], [2], [3], [4], [5] util::from_string_bool (C++ function) util::from_string_double (C++ function) util::from_string_int (C++ function) util::from_string_unsigned (C++ function)

util::saveToFile (C++ function) util::to_string (C++ function) util::to_string_scientific (C++ function) util::to_string_vec (C++ function) util::to_string_with_precision (C++ function) util::writeToFile (C++ function), [1]

V

vcross (C macro) vdot (C macro) VertexCompute (C++ type) vertices_type (C++ struct) vertices_type::energy (C++ member) vertices_type::forceC (C++ member) vertices_type::forceD (C++ member) vertices_type::forceE (C++ member)

vertices_type::id (C++ member) vertices_type::mass (C++ member) vertices_type::operator< (C++ function) vertices_type::prop (C++ member) vertices_type::r (C++ member) vertices_type::type (C++ member) vset (C macro) vsub (C macro) vsum (C macro)

X

Xvec1 (C macro), [1], [2], [3] Xvec2 (C macro), [1], [2], [3] Xvec3 (C macro), [1], [2] Xvec4 (C macro), [1], [2]

xyType (C++ struct), [1] xyType::w (C++ member), [1] xyType::x (C++ member), [1] xyType::y (C++ member), [1] xyType::z (C++ member), [1]